PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G16610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 259aa    MW: 28193.7 Da    PI: 8.659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G16610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-1084131455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OB04G16610.1  84 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 131
                   8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.98E-1178135No hitNo description
SuperFamilySSF474592.36E-1778149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1680148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.61280130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-784131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-986136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSPSKPAAAE APARKRKSSA KGKASSSTMP AATAATTTNA SPKRTKVITG SGDGDGDDAA  60
AEEKPEPPKD YIHVRARRGQ ATDSHSLAER VRRERISERM KLLQSLVPGC NKITGKALML  120
DEIINYVQSL QRQVEFLSMK LATMNPQLDF DGHYLPSKDM SHMSLPAYPP NDLTTATAFS  180
YIDAPTTGDP FTTYNCWDQL DLHTAMQMGA TATDLNQDSP VATIAPSSSP LPHHPPPHHR  240
FYGRQQQQGT TVNHMKAEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691840.11e-146PREDICTED: transcription factor bHLH77-like
SwissprotQ9SRT23e-54BH062_ARATH; Transcription factor bHLH62
TrEMBLJ3LWY60.0J3LWY6_ORYBR; Uncharacterized protein
STRINGOB04G16610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-48bHLH family protein